Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR3179588/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  213,935,878
 Normal Paired: 186,579,871 (87.21%)
 Chimeric Paired: 24,239,497 (11.33%)
 Chimeric Ambiguous: 2,628,392 (1.23%)
 Unmapped: 488,118 (0.23%)
 Ligation Motif Present: 60,467 (0.03%)
Alignable (Normal+Chimeric Paired): 210,819,368 (98.54%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-27T01:12:45,323]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 54,101,461 (25.29%)
PCR Duplicates: 156,717,907 (73.25%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 55,326,253
Intra-fragment Reads: 27,793,077 (12.99% / 51.37%)
Below MAPQ Threshold: 3,499,480 (1.64% / 6.47%)
Hi-C Contacts: 22,808,904 (10.66% / 42.16%)
 Ligation Motif Present: 16,925  (0.01% / 0.03%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 24%
Inter-chromosomal: 4,397,316  (2.06% / 8.13%)
Intra-chromosomal: 18,411,588  (8.61% / 34.03%)
Short Range (<20Kb): 10,693,525  (5.00% / 19.77%)
Long Range (>20Kb): 7,718,050  (3.61% / 14.27%)